J3_6WOO_034

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAC*GGACUA*UGGAAGUUU

Length

18 nucleotides

Bulged bases

6WOO|1|2|U|1390, 6WOO|1|2|U|1413, 6WOO|1|2|U|1414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_034 not in the Motif Atlas

Homologous match to J3_8C3A_086

Geometric discrepancy: 0.1346

The information below is about J3_8C3A_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_80847.1

Basepair signature

cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6WOO|1|2|A|1336
6WOO|1|2|A|1337
6WOO|1|2|C|1338
*
6WOO|1|2|G|1386
6WOO|1|2|G|1387
6WOO|1|2|A|1388
6WOO|1|2|C|1389
6WOO|1|2|U|1390
6WOO|1|2|A|1391
*
6WOO|1|2|U|1407
6WOO|1|2|G|1408
6WOO|1|2|G|1409
6WOO|1|2|A|1410
6WOO|1|2|A|1411
6WOO|1|2|G|1412
6WOO|1|2|U|1413
6WOO|1|2|U|1414
6WOO|1|2|U|1415

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain FF

uS7

Chain QQ

uS19

Chain RR

eS17

Chain UU

uS10

Chain dd

uS14

Chain gg

RACK1