J3_6WOO_037
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6WOO|1|5|U|343, 6WOO|1|5|A|351, 6WOO|1|8|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_037 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0614
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6WOO|1|5|C|340
6WOO|1|5|G|341
6WOO|1|5|A|342
6WOO|1|5|U|343
6WOO|1|5|A|344
6WOO|1|5|G|345
6WOO|1|5|C|346
6WOO|1|5|G|347
6WOO|1|5|A|348
6WOO|1|5|A|349
6WOO|1|5|C|350
6WOO|1|5|A|351
6WOO|1|5|A|352
6WOO|1|5|G|353
6WOO|1|5|U|354
6WOO|1|5|A|355
6WOO|1|5|C|356
*
6WOO|1|5|G|363
6WOO|1|5|G|364
6WOO|1|5|A|365
6WOO|1|5|A|366
6WOO|1|5|A|367
6WOO|1|5|G|368
*
6WOO|1|8|C|21
6WOO|1|8|U|22
6WOO|1|8|U|23
6WOO|1|8|G|24
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal rRNA
Nearby chains
- Chain C
- uL4
- Chain Y
- uL24
- Chain j
- eL37
- Chain l
- eL39
Coloring options: