J3_6WOO_038
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6WOO|1|5|A|398, 6WOO|1|5|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_038 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0909
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6WOO|1|5|A|369
6WOO|1|5|U|370
6WOO|1|5|G|371
6WOO|1|5|A|372
6WOO|1|5|A|373
6WOO|1|5|A|374
6WOO|1|5|A|375
6WOO|1|5|G|376
6WOO|1|5|A|377
6WOO|1|5|A|378
6WOO|1|5|C|379
*
6WOO|1|5|G|390
6WOO|1|5|A|391
6WOO|1|5|G|392
6WOO|1|5|U|393
6WOO|1|5|G|394
6WOO|1|5|A|395
6WOO|1|5|A|396
6WOO|1|5|A|397
6WOO|1|5|A|398
6WOO|1|5|A|399
6WOO|1|5|G|400
6WOO|1|5|U|401
6WOO|1|5|A|402
6WOO|1|5|C|403
6WOO|1|5|G|404
*
6WOO|1|8|C|19
6WOO|1|8|U|20
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal rRNA
Nearby chains
- Chain C
- uL4
- Chain P
- uL22
- Chain Y
- uL24
- Chain l
- eL39
Coloring options: