J3_6WOO_040
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_040 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.0755
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6WOO|1|5|A|1654
6WOO|1|5|G|1655
6WOO|1|5|A|1656
6WOO|1|5|C|1657
6WOO|1|5|G|1658
*
6WOO|1|5|C|1791
6WOO|1|5|C|1792
*
6WOO|1|5|G|1796
6WOO|1|5|A|1797
6WOO|1|5|A|1798
6WOO|1|5|A|1799
6WOO|1|5|A|1800
6WOO|1|5|U|1801
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain g
- eL34
- Chain p
- eL43
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