J3_6WOO_042
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6WOO|1|5|C|2760, 6WOO|1|5|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_042 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0641
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6WOO|1|5|G|2651
6WOO|1|5|U|2652
6WOO|1|5|C|2653
*
6WOO|1|5|G|2754
6WOO|1|5|C|2755
6WOO|1|5|C|2756
6WOO|1|5|U|2757
6WOO|1|5|A|2758
6WOO|1|5|U|2759
6WOO|1|5|C|2760
6WOO|1|5|G|2761
6WOO|1|5|A|2762
6WOO|1|5|U|2763
6WOO|1|5|C|2764
6WOO|1|5|C|2765
*
6WOO|1|5|G|2793
6WOO|1|5|G|2794
6WOO|1|5|U|2795
6WOO|1|5|G|2796
6WOO|1|5|C|2797
6WOO|1|5|C|2798
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- eL42
Coloring options: