J3_6WQN_012
3D structure
- PDB id
- 6WQN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6WQN|1|1|U|549, 6WQN|1|1|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WQN_012 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.1644
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6WQN|1|1|G|30
6WQN|1|1|C|31
*
6WQN|1|1|G|520
6WQN|1|1|U|521
6WQN|1|1|G|522
6WQN|1|1|A|523
6WQN|1|1|A|524
6WQN|1|1|A|525
6WQN|1|1|A|526
6WQN|1|1|G|527
6WQN|1|1|C|528
6WQN|1|1|A|529
6WQN|1|1|C|530
*
6WQN|1|1|G|541
6WQN|1|1|A|542
6WQN|1|1|G|543
6WQN|1|1|U|544
6WQN|1|1|G|545
6WQN|1|1|A|546
6WQN|1|1|A|547
6WQN|1|1|A|548
6WQN|1|1|U|549
6WQN|1|1|A|550
6WQN|1|1|G|551
6WQN|1|1|A|552
6WQN|1|1|A|553
6WQN|1|1|C|554
6WQN|1|1|C|555
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
- Chain E
- 50S ribosomal protein L22
- Chain G
- 50S ribosomal protein L24
Coloring options: