J3_6WQQ_007

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6WQQ|1|1|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WQQ_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1009

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6WQQ|1|1|C|1342
6WQQ|1|1|U|1343
6WQQ|1|1|A|1344
6WQQ|1|1|A|1345
6WQQ|1|1|G|1346
*
6WQQ|1|1|C|1649
6WQQ|1|1|G|1650
6WQQ|1|1|C|1651
6WQQ|1|1|A|1652
6WQQ|1|1|A|1653
6WQQ|1|1|A|1654
6WQQ|1|1|C|1655
*
6WQQ|1|1|G|1664
6WQQ|1|1|U|1665
6WQQ|1|1|A|1666
6WQQ|1|1|G|1667

Current chains

Chain 1

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L34