J3_6XA1_009

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|A|2538
6XA1|1|L5|G|2539
6XA1|1|L5|A|2540
6XA1|1|L5|U|2541
6XA1|1|L5|G|2542
*
6XA1|1|L5|C|2559
6XA1|1|L5|A|2560
6XA1|1|L5|G|2561
6XA1|1|L5|U|2562
*
6XA1|1|L5|A|2744
6XA1|1|L5|G|2745
6XA1|1|L5|G|2746
6XA1|1|L5|G|2747
6XA1|1|L5|U|2748
6XA1|1|L5|G|2749
6XA1|1|L5|U|2750
6XA1|1|L5|A|2751
6XA1|1|L5|A|2752
6XA1|1|L5|A|2753
6XA1|1|L5|U|2754

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27