J3_6XA1_011

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XA1_011 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1406

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6XA1|1|L5|C|3916
6XA1|1|L5|G|3917
6XA1|1|L5|G|3918
*
6XA1|1|L5|C|4052
6XA1|1|L5|U|4053
6XA1|1|L5|G|4054
6XA1|1|L5|A|4055
6XA1|1|L5|C|4056
*
6XA1|1|L5|G|4138
6XA1|1|L5|G|4139
6XA1|1|L5|A|4140
6XA1|1|L5|C|4141
6XA1|1|L5|A|4142
6XA1|1|L5|G|4143

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15