J3_6XA1_032
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6XA1|1|L5|U|345, 6XA1|1|L5|A|353, 6XA1|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XA1_032 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0693
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6XA1|1|L5|C|342
6XA1|1|L5|G|343
6XA1|1|L5|A|344
6XA1|1|L5|U|345
6XA1|1|L5|A|346
6XA1|1|L5|G|347
6XA1|1|L5|U|348
6XA1|1|L5|C|349
6XA1|1|L5|A|350
6XA1|1|L5|A|351
6XA1|1|L5|C|352
6XA1|1|L5|A|353
6XA1|1|L5|A|354
6XA1|1|L5|G|355
6XA1|1|L5|U|356
6XA1|1|L5|A|357
6XA1|1|L5|C|358
*
6XA1|1|L5|G|365
6XA1|1|L5|G|366
6XA1|1|L5|A|367
6XA1|1|L5|A|368
6XA1|1|L5|A|369
6XA1|1|L5|G|370
*
6XA1|1|L8|C|21
6XA1|1|L8|U|22
6XA1|1|L8|C|23
6XA1|1|L8|G|24
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
- Chain NC
- Stalled Nascent chain
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