J3_6XA1_035

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

6XA1|1|L5|A|1792, 6XA1|1|L5|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XA1_035 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.417

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6XA1|1|L5|U|1713
6XA1|1|L5|U|1714
*
6XA1|1|L5|A|1789
6XA1|1|L5|G|1790
6XA1|1|L5|A|1791
6XA1|1|L5|A|1792
6XA1|1|L5|G|1793
*
6XA1|1|L5|C|1819
6XA1|1|L5|G|1820
6XA1|1|L5|U|1821
6XA1|1|L5|G|1822
6XA1|1|L5|G|1823
6XA1|1|L5|A|1824

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29