J3_6XA1_037

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XA1_037 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1649

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6XA1|1|L5|A|2585
6XA1|1|L5|G|2586
6XA1|1|L5|A|2587
6XA1|1|L5|A|2588
6XA1|1|L5|G|2589
*
6XA1|1|L5|C|2724
6XA1|1|L5|C|2725
*
6XA1|1|L5|G|2729
6XA1|1|L5|A|2730
6XA1|1|L5|A|2731
6XA1|1|L5|A|2732
6XA1|1|L5|A|2733
6XA1|1|L5|U|2734

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a