J3_6XA1_038
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 6XA1|1|L5|C|4307, 6XA1|1|L5|U|4344
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XA1_038 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0766
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6XA1|1|L5|OMG|4198
6XA1|1|L5|U|4199
6XA1|1|L5|C|4200
*
6XA1|1|L5|G|4301
6XA1|1|L5|C|4302
6XA1|1|L5|C|4303
6XA1|1|L5|U|4304
6XA1|1|L5|C|4305
6XA1|1|L5|A|4306
6XA1|1|L5|C|4307
6XA1|1|L5|G|4308
6XA1|1|L5|A|4309
6XA1|1|L5|U|4310
6XA1|1|L5|C|4311
6XA1|1|L5|C|4312
*
6XA1|1|L5|OMG|4340
6XA1|1|L5|G|4341
6XA1|1|L5|U|4342
6XA1|1|L5|G|4343
6XA1|1|L5|U|4344
6XA1|1|L5|C|4345
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
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