J3_6XDQ_019
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 6XDQ|1|a|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XDQ_019 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.1109
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XDQ|1|a|C|1306
6XDQ|1|a|A|1307
6XDQ|1|a|A|1308
6XDQ|1|a|G|1309
*
6XDQ|1|a|C|1605
6XDQ|1|a|C|1606
6XDQ|1|a|C|1607
6XDQ|1|a|A|1608
6XDQ|1|a|A|1609
6XDQ|1|a|A|1610
6XDQ|1|a|C|1611
*
6XDQ|1|a|G|1620
6XDQ|1|a|U|1621
6XDQ|1|a|G|1622
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L34
Coloring options: