J3_6XDR_004

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6XDR|1|D|U|871, 6XDR|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XDR_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0723

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6XDR|1|D|C|826
6XDR|1|D|U|827
6XDR|1|D|U|828
6XDR|1|D|G|829
*
6XDR|1|D|C|857
6XDR|1|D|G|858
6XDR|1|D|G|859
6XDR|1|D|A|860
6XDR|1|D|G|861
*
6XDR|1|D|C|868
6XDR|1|D|G|869
6XDR|1|D|U|870
6XDR|1|D|U|871
6XDR|1|D|A|872
6XDR|1|D|A|873
6XDR|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8