J3_6XDR_027

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6XDR|1|D|C|48, 6XDR|1|D|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XDR_027 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0659

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6XDR|1|D|G|46
6XDR|1|D|C|47
6XDR|1|D|C|48
6XDR|1|D|U|49
6XDR|1|D|A|50
6XDR|1|D|A|51
6XDR|1|D|C|52
*
6XDR|1|D|G|359
6XDR|1|D|G|360
6XDR|1|D|G|361
6XDR|1|D|G|362
6XDR|1|D|A|363
6XDR|1|D|A|364
6XDR|1|D|U|365
6XDR|1|D|A|366
6XDR|1|D|U|367
*
6XDR|1|D|A|393
6XDR|1|D|G|394
6XDR|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16