J3_6XE0_005

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XE0_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.114

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6XE0|1|W|C|936
6XE0|1|W|A|937
6XE0|1|W|A|938
6XE0|1|W|G|939
*
6XE0|1|W|C|1344
6XE0|1|W|U|1345
6XE0|1|W|A|1346
6XE0|1|W|G|1347
6XE0|1|W|U|1348
6XE0|1|W|A|1349
6XE0|1|W|A|1350
*
6XE0|1|W|U|1372
6XE0|1|W|G|1373
6XE0|1|W|A|1374
6XE0|1|W|A|1375
6XE0|1|W|U|1376
6XE0|1|W|A|1377
6XE0|1|W|C|1378
6XE0|1|W|G|1379

Current chains

Chain W

16s rRNA

Nearby chains

Chain F

30S ribosomal protein S7

Chain H

30S ribosomal protein S9