J3_6XE0_007
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6XE0|1|W|A|958, 6XE0|1|W|A|975, 6XE0|1|W|G|976, 6XE0|1|W|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XE0_007 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1484
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6XE0|1|W|U|955
6XE0|1|W|U|956
6XE0|1|W|U|957
6XE0|1|W|A|958
6XE0|1|W|A|959
6XE0|1|W|U|960
6XE0|1|W|U|961
6XE0|1|W|C|962
*
6XE0|1|W|G|973
6XE0|1|W|A|974
6XE0|1|W|A|975
6XE0|1|W|G|976
6XE0|1|W|A|977
6XE0|1|W|A|978
6XE0|1|W|C|979
6XE0|1|W|C|980
6XE0|1|W|U|981
6XE0|1|W|U|982
6XE0|1|W|A|983
6XE0|1|W|C|984
*
6XE0|1|W|G|1221
6XE0|1|W|G|1222
6XE0|1|W|C|1223
6XE0|1|W|U|1224
6XE0|1|W|A|1225
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S10
- Chain L
- 30S ribosomal protein S13
- Chain M
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
Coloring options: