J3_6XGF_018

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XGF_018 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0593

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6XGF|1|a|C|1298
6XGF|1|a|G|1299
6XGF|1|a|G|1300
6XGF|1|a|A|1301
6XGF|1|a|A|1302
6XGF|1|a|G|1303
*
6XGF|1|a|C|1625
6XGF|1|a|A|1626
6XGF|1|a|G|1627
*
6XGF|1|a|C|1639
6XGF|1|a|A|1640
6XGF|1|a|A|1641
6XGF|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains