J3_6XHV_056
3D structure
- PDB id
- 6XHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 6XHV|1|1A|U|504, 6XHV|1|1A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XHV_056 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0386
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6XHV|1|1A|G|30
6XHV|1|1A|C|31
*
6XHV|1|1A|G|474
6XHV|1|1A|U|475
6XHV|1|1A|G|476
6XHV|1|1A|A|477
6XHV|1|1A|A|478
6XHV|1|1A|A|479
6XHV|1|1A|A|480
6XHV|1|1A|G|481
6XHV|1|1A|A|482
6XHV|1|1A|A|483
6XHV|1|1A|C|484
*
6XHV|1|1A|G|496
6XHV|1|1A|A|497
6XHV|1|1A|G|498
6XHV|1|1A|U|499
6XHV|1|1A|G|500
6XHV|1|1A|A|501
6XHV|1|1A|A|502
6XHV|1|1A|A|503
6XHV|1|1A|U|504
6XHV|1|1A|A|505
6XHV|1|1A|G|506
6XHV|1|1A|A|507
6XHV|1|1A|G|508
6XHV|1|1A|C|509
6XHV|1|1A|C|510
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: