J3_6XHV_068

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6XHV|1|2A|C|34, 6XHV|1|2A|U|448, 6XHV|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHV_068 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0791

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

6XHV|1|2A|C|32
6XHV|1|2A|U|33
6XHV|1|2A|C|34
6XHV|1|2A|G|35
*
6XHV|1|2A|C|445
6XHV|1|2A|G|446
6XHV|1|2A|A|447
6XHV|1|2A|U|448
6XHV|1|2A|A|449
6XHV|1|2A|G|450
6XHV|1|2A|C|451
6XHV|1|2A|G|452
6XHV|1|2A|C|453
6XHV|1|2A|A|454
6XHV|1|2A|C|455
6XHV|1|2A|C|456
6XHV|1|2A|A|457
6XHV|1|2A|G|458
6XHV|1|2A|U|459
6XHV|1|2A|A|460
6XHV|1|2A|C|461
*
6XHV|1|2A|G|468
6XHV|1|2A|G|469
6XHV|1|2A|A|470
6XHV|1|2A|A|471
6XHV|1|2A|A|472
6XHV|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23