J3_6XHW_072

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6XHW|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHW_072 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1549

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6XHW|1|2a|C|990
6XHW|1|2a|U|991
6XHW|1|2a|U|992
6XHW|1|2a|G|993
6XHW|1|2a|A|994
6XHW|1|2a|C|995
6XHW|1|2a|A|996
6XHW|1|2a|U|997
*
6XHW|1|2a|A|1044
6XHW|1|2a|C|1045
6XHW|1|2a|A|1046
6XHW|1|2a|G|1047
*
6XHW|1|2a|C|1210
6XHW|1|2a|U|1211
6XHW|1|2a|U|1212
6XHW|1|2a|A|1213
6XHW|1|2a|C|1214
6XHW|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z