3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
6XHX|1|2a|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XHX_054 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1216
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6XHX|1|2a|C|1237
6XHX|1|2a|A|1238
6XHX|1|2a|A|1239
6XHX|1|2a|U|1240
6XHX|1|2a|G|1241
*
6XHX|1|2a|C|1296
6XHX|1|2a|C|1297
6XHX|1|2a|C|1298
6XHX|1|2a|A|1299
6XHX|1|2a|G|1300
6XHX|1|2a|U|1301
6XHX|1|2a|U|1302
6XHX|1|2a|C|1303
*
6XHX|1|2a|G|1334
6XHX|1|2a|C|1335
6XHX|1|2a|C|1336
6XHX|1|2a|G|1337

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2g
30S ribosomal protein S7
Chain 2m
30S ribosomal protein S13
Chain 2u
30S ribosomal protein Thx

Coloring options:


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