J3_6XHX_064

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6XHX|1|2A|U|504, 6XHX|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHX_064 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0554

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6XHX|1|2A|G|30
6XHX|1|2A|C|31
*
6XHX|1|2A|G|474
6XHX|1|2A|U|475
6XHX|1|2A|G|476
6XHX|1|2A|A|477
6XHX|1|2A|A|478
6XHX|1|2A|A|479
6XHX|1|2A|A|480
6XHX|1|2A|G|481
6XHX|1|2A|A|482
6XHX|1|2A|A|483
6XHX|1|2A|C|484
*
6XHX|1|2A|G|496
6XHX|1|2A|A|497
6XHX|1|2A|G|498
6XHX|1|2A|U|499
6XHX|1|2A|G|500
6XHX|1|2A|A|501
6XHX|1|2A|A|502
6XHX|1|2A|A|503
6XHX|1|2A|U|504
6XHX|1|2A|A|505
6XHX|1|2A|G|506
6XHX|1|2A|A|507
6XHX|1|2A|G|508
6XHX|1|2A|C|509
6XHX|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24