3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6XHX|1|2A|U|448, 6XHX|1|2A|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XHX_065 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0578
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6XHX|1|2A|C|32
6XHX|1|2A|U|33
6XHX|1|2A|C|34
6XHX|1|2A|G|35
*
6XHX|1|2A|C|445
6XHX|1|2A|G|446
6XHX|1|2A|A|447
6XHX|1|2A|U|448
6XHX|1|2A|A|449
6XHX|1|2A|G|450
6XHX|1|2A|C|451
6XHX|1|2A|G|452
6XHX|1|2A|C|453
6XHX|1|2A|A|454
6XHX|1|2A|C|455
6XHX|1|2A|C|456
6XHX|1|2A|A|457
6XHX|1|2A|G|458
6XHX|1|2A|U|459
6XHX|1|2A|A|460
6XHX|1|2A|C|461
*
6XHX|1|2A|G|468
6XHX|1|2A|G|469
6XHX|1|2A|A|470
6XHX|1|2A|A|471
6XHX|1|2A|A|472
6XHX|1|2A|G|473

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2F
50S ribosomal protein L4
Chain 2U
50S ribosomal protein L20
Chain 2X
50S ribosomal protein L23

Coloring options:


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