J3_6XHY_073

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6XHY|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHY_073 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1511

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6XHY|1|2a|C|990
6XHY|1|2a|U|991
6XHY|1|2a|U|992
6XHY|1|2a|G|993
6XHY|1|2a|A|994
6XHY|1|2a|C|995
6XHY|1|2a|A|996
6XHY|1|2a|U|997
*
6XHY|1|2a|A|1044
6XHY|1|2a|C|1045
6XHY|1|2a|A|1046
6XHY|1|2a|G|1047
*
6XHY|1|2a|C|1210
6XHY|1|2a|U|1211
6XHY|1|2a|U|1212
6XHY|1|2a|A|1213
6XHY|1|2a|C|1214
6XHY|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z