J3_6XIQ_011

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XIQ_011 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.3828

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6XIQ|1|2|A|41
6XIQ|1|2|G|42
*
6XIQ|1|2|C|433
6XIQ|1|2|G|434
6XIQ|1|2|C|435
6XIQ|1|2|A|436
6XIQ|1|2|A|437
6XIQ|1|2|A|438
6XIQ|1|2|U|439
*
6XIQ|1|2|A|464
6XIQ|1|2|G|465
6XIQ|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain z

40S ribosomal protein S9-A