3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UGA*UAAUA*UA
Length
10 nucleotides
Bulged bases
6XIQ|1|2|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XIQ_012 not in the Motif Atlas
Geometric match to J3_4V88_080
Geometric discrepancy: 0.1543
The information below is about J3_4V88_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.3
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
6

Unit IDs

6XIQ|1|2|U|633
6XIQ|1|2|G|634
6XIQ|1|2|A|635
*
6XIQ|1|2|U|861
6XIQ|1|2|A|862
6XIQ|1|2|A|863
6XIQ|1|2|U|864
6XIQ|1|2|A|865
*
6XIQ|1|2|U|965
6XIQ|1|2|A|966

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AB
40S ribosomal protein S11-A
Chain AD
40S ribosomal protein S13
Chain AM
RPS22A isoform 1
Chain AN
40S ribosomal protein S23-A
Chain AR
40S ribosomal protein S27-A
Chain x
40S ribosomal protein S7-A

Coloring options:


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