J3_6XIQ_020

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XIQ_020 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.3298

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6XIQ|1|2|U|1293
6XIQ|1|2|G|1294
*
6XIQ|1|2|U|1303
6XIQ|1|2|G|1304
6XIQ|1|2|U|1305
6XIQ|1|2|C|1306
*
6XIQ|1|2|G|1318
6XIQ|1|2|A|1319
6XIQ|1|2|U|1320
6XIQ|1|2|A|1321
6XIQ|1|2|A|1322

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B

Chain q

40S ribosomal protein S0-A

Chain s

RPS2 isoform 1