J3_6XIR_014

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

6XIR|1|1|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XIR_014 not in the Motif Atlas

Homologous match to J3_8C3A_010

Geometric discrepancy: 0.087

The information below is about J3_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6XIR|1|1|C|2664
6XIR|1|1|U|2665
6XIR|1|1|C|2666
*
6XIR|1|1|G|2690
6XIR|1|1|A|2691
6XIR|1|1|A|2692
*
6XIR|1|1|U|2701
6XIR|1|1|A|2702
6XIR|1|1|A|2703
6XIR|1|1|A|2704
6XIR|1|1|A|2705
6XIR|1|1|G|2706

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain D

RPL5 isoform 1

Chain J

RPL11B isoform 1

Chain T

60S ribosomal protein L21-A