3D structure

PDB id
6XIR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XIR_020 not in the Motif Atlas
Homologous match to J3_4V88_034
Geometric discrepancy: 0.3036
The information below is about J3_4V88_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23622.1
Basepair signature
cWW-tWW-tWW-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6XIR|1|2|C|1037
6XIR|1|2|U|1038
6XIR|1|2|A|1039
*
6XIR|1|2|U|1079
6XIR|1|2|U|1080
6XIR|1|2|A|1081
6XIR|1|2|C|1082
6XIR|1|2|G|1083
*
6XIR|1|2|C|1090
6XIR|1|2|A|1091
6XIR|1|2|A|1092
6XIR|1|2|A|1093
6XIR|1|2|G|1094

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AL
40S ribosomal protein S21-A
Chain AM
RPS22A isoform 1
Chain AQ
RPS26B isoform 1
Chain AR
40S ribosomal protein S27-A
Chain n
RPL41A isoform 1
Chain q
40S ribosomal protein S0-A

Coloring options:


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