J3_6XIR_033
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6XIR|1|1|A|398, 6XIR|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XIR_033 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.096
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6XIR|1|1|A|369
6XIR|1|1|U|370
6XIR|1|1|G|371
6XIR|1|1|A|372
6XIR|1|1|A|373
6XIR|1|1|A|374
6XIR|1|1|A|375
6XIR|1|1|G|376
6XIR|1|1|A|377
6XIR|1|1|A|378
6XIR|1|1|C|379
*
6XIR|1|1|G|390
6XIR|1|1|A|391
6XIR|1|1|G|392
6XIR|1|1|U|393
6XIR|1|1|G|394
6XIR|1|1|A|395
6XIR|1|1|A|396
6XIR|1|1|A|397
6XIR|1|1|A|398
6XIR|1|1|A|399
6XIR|1|1|G|400
6XIR|1|1|U|401
6XIR|1|1|A|402
6XIR|1|1|C|403
6XIR|1|1|G|404
*
6XIR|1|4|C|19
6XIR|1|4|U|20
Current chains
- Chain 1
- 35S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- RPL4A isoform 1
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
Coloring options: