J3_6XQD_040

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

6XQD|1|2A|G|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XQD_040 not in the Motif Atlas

Homologous match to J3_4WF9_021

Geometric discrepancy: 0.2025

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6XQD|1|2A|C|2814
6XQD|1|2A|C|2815
*
6XQD|1|2A|G|2831
6XQD|1|2A|U|2832
6XQD|1|2A|G|2833
6XQD|1|2A|G|2834
6XQD|1|2A|A|2835
6XQD|1|2A|U|2836
*
6XQD|1|2A|A|2882
6XQD|1|2A|A|2883
6XQD|1|2A|U|2884
6XQD|1|2A|C|2885
6XQD|1|2A|G|2886

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17