J3_6XQE_041
3D structure
- PDB id
- 6XQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 6XQE|1|2A|G|2833
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XQE_041 not in the Motif Atlas
- Homologous match to J3_4WF9_021
- Geometric discrepancy: 0.1883
- The information below is about J3_4WF9_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XQE|1|2A|C|2814
6XQE|1|2A|C|2815
*
6XQE|1|2A|G|2831
6XQE|1|2A|U|2832
6XQE|1|2A|G|2833
6XQE|1|2A|G|2834
6XQE|1|2A|A|2835
6XQE|1|2A|U|2836
*
6XQE|1|2A|A|2882
6XQE|1|2A|A|2883
6XQE|1|2A|U|2884
6XQE|1|2A|C|2885
6XQE|1|2A|G|2886
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 2E
- 50S ribosomal protein L3
- Chain 2R
- 50S ribosomal protein L17
- Chain 2T
- 50S ribosomal protein L19
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