J3_6XQE_045

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6XQE|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XQE_045 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0948

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6XQE|1|2a|C|826
6XQE|1|2a|U|827
6XQE|1|2a|A|828
6XQE|1|2a|G|829
*
6XQE|1|2a|C|857
6XQE|1|2a|G|858
6XQE|1|2a|A|859
6XQE|1|2a|A|860
6XQE|1|2a|G|861
*
6XQE|1|2a|C|868
6XQE|1|2a|G|869
6XQE|1|2a|U|870
6XQE|1|2a|U|871
6XQE|1|2a|A|872
6XQE|1|2a|A|873
6XQE|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5

Chain 2h

30S ribosomal protein S8