J3_6XYW_025

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAAUG*CUCAGUUC*GUUG

Length

17 nucleotides

Bulged bases

6XYW|1|2|U|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_025 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2065

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6XYW|1|2|C|1587
6XYW|1|2|A|1588
6XYW|1|2|A|1589
6XYW|1|2|U|1590
6XYW|1|2|G|1591
*
6XYW|1|2|C|1645
6XYW|1|2|U|1646
6XYW|1|2|C|1647
6XYW|1|2|A|1648
6XYW|1|2|G|1649
6XYW|1|2|U|1650
6XYW|1|2|U|1651
6XYW|1|2|C|1652
*
6XYW|1|2|G|1683
6XYW|1|2|U|1684
6XYW|1|2|U|1685
6XYW|1|2|G|1686

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bf

Ribosomal protein S7, mitochondrial

Chain Bl

Small ribosomal subunit protein S13, mitochondrial

Chain Bt

30S ribosomal protein S31, mitochondrial