J3_6XYW_035

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GCUUAAC*GGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6XYW|1|2|U|56, 6XYW|1|2|A|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_035 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1458

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6XYW|1|2|G|54
6XYW|1|2|C|55
6XYW|1|2|U|56
6XYW|1|2|U|57
6XYW|1|2|A|58
6XYW|1|2|A|59
6XYW|1|2|C|60
*
6XYW|1|2|G|378
6XYW|1|2|G|379
6XYW|1|2|G|380
6XYW|1|2|G|381
6XYW|1|2|A|382
6XYW|1|2|A|383
6XYW|1|2|U|384
6XYW|1|2|C|385
6XYW|1|2|U|386
*
6XYW|1|2|A|411
6XYW|1|2|G|412
6XYW|1|2|C|413

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bk

Ribosomal protein S12, mitochondrial

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial