J3_6XYW_041

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

6XYW|1|2|U|1562, 6XYW|1|2|U|1564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_041 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2081

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6XYW|1|2|C|983
6XYW|1|2|U|984
6XYW|1|2|U|985
6XYW|1|2|G|986
6XYW|1|2|A|987
6XYW|1|2|C|988
6XYW|1|2|A|989
6XYW|1|2|U|990
*
6XYW|1|2|A|1036
6XYW|1|2|C|1037
6XYW|1|2|A|1038
6XYW|1|2|G|1039
*
6XYW|1|2|C|1560
6XYW|1|2|U|1561
6XYW|1|2|U|1562
6XYW|1|2|A|1563
6XYW|1|2|U|1564
6XYW|1|2|G|1565

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bm

At2g34520

Chain Bx

37S ribosomal protein S27