J3_6XZ7_010

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUA*UAG*CAUAAG

Length

12 nucleotides

Bulged bases

6XZ7|1|A|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZ7_010 not in the Motif Atlas

Homologous match to J3_5J7L_045

Geometric discrepancy: 0.109

The information below is about J3_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6XZ7|1|A|C|2295
6XZ7|1|A|U|2296
6XZ7|1|A|A|2297
*
6XZ7|1|A|U|2321
6XZ7|1|A|A|2322
6XZ7|1|A|G|2323
*
6XZ7|1|A|C|2332
6XZ7|1|A|A|2333
6XZ7|1|A|U|2334
6XZ7|1|A|A|2335
6XZ7|1|A|A|2336
6XZ7|1|A|G|2337

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain f

Transfer RNA; tRNA