3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6XZ7|1|A|A|504, 6XZ7|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XZ7_015 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1093
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6XZ7|1|A|G|30
6XZ7|1|A|C|31
*
6XZ7|1|A|G|474
6XZ7|1|A|C|475
6XZ7|1|A|G|476
6XZ7|1|A|A|477
6XZ7|1|A|A|478
6XZ7|1|A|A|479
6XZ7|1|A|A|480
6XZ7|1|A|G|481
6XZ7|1|A|A|482
6XZ7|1|A|A|483
6XZ7|1|A|C|484
*
6XZ7|1|A|G|496
6XZ7|1|A|A|497
6XZ7|1|A|G|498
6XZ7|1|A|U|499
6XZ7|1|A|G|500
6XZ7|1|A|A|501
6XZ7|1|A|A|502
6XZ7|1|A|A|503
6XZ7|1|A|A|504
6XZ7|1|A|A|505
6XZ7|1|A|G|506
6XZ7|1|A|A|507
6XZ7|1|A|A|508
6XZ7|1|A|C|509
6XZ7|1|A|C|510

Current chains

Chain A
23S rRNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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