J3_6XZA_021

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZA_021 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0433

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6XZA|1|A2|C|2091
6XZA|1|A2|U|2092
6XZA|1|A2|G|2093
*
6XZA|1|A2|C|2196
6XZA|1|A2|U|2197
6XZA|1|A2|A|2198
6XZA|1|A2|A|2199
6XZA|1|A2|C|2200
*
6XZA|1|A2|G|2223
6XZA|1|A2|G|2224
6XZA|1|A2|A|2225
6XZA|1|A2|C|2226
6XZA|1|A2|A|2227
6XZA|1|A2|G|2228

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain X2

50S ribosomal protein L28