J3_6XZB_004
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6XZB|1|A1|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XZB_004 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.0668
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6XZB|1|A1|C|826
6XZB|1|A1|U|827
6XZB|1|A1|U|828
6XZB|1|A1|G|829
*
6XZB|1|A1|C|857
6XZB|1|A1|G|858
6XZB|1|A1|G|859
6XZB|1|A1|A|860
6XZB|1|A1|G|861
*
6XZB|1|A1|C|868
6XZB|1|A1|G|869
6XZB|1|A1|U|870
6XZB|1|A1|U|871
6XZB|1|A1|A|872
6XZB|1|A1|A|873
6XZB|1|A1|G|874
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain B1
- 30S ribosomal protein S2
- Chain H1
- 30S ribosomal protein S8
- Chain U1
- 30S ribosomal protein S21
Coloring options: