3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
6XZB|1|A1|U|1240, 6XZB|1|A1|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XZB_012 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.1163
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6XZB|1|A1|C|1237
6XZB|1|A1|A|1238
6XZB|1|A1|A|1239
6XZB|1|A1|U|1240
6XZB|1|A1|G|1241
*
6XZB|1|A1|C|1296
6XZB|1|A1|G|1297
6XZB|1|A1|U|1298
6XZB|1|A1|A|1299
6XZB|1|A1|G|1300
6XZB|1|A1|U|1301
6XZB|1|A1|C|1302
6XZB|1|A1|C|1303
*
6XZB|1|A1|G|1334
6XZB|1|A1|U|1335
6XZB|1|A1|C|1336
6XZB|1|A1|G|1337

Current chains

Chain A1
16S rRNA

Nearby chains

Chain G1
30S ribosomal protein S7
Chain M1
30S ribosomal protein S13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0886 s