J3_6XZB_031
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6XZB|1|A2|A|504, 6XZB|1|A2|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XZB_031 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1093
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6XZB|1|A2|G|30
6XZB|1|A2|C|31
*
6XZB|1|A2|G|474
6XZB|1|A2|C|475
6XZB|1|A2|G|476
6XZB|1|A2|A|477
6XZB|1|A2|A|478
6XZB|1|A2|A|479
6XZB|1|A2|A|480
6XZB|1|A2|G|481
6XZB|1|A2|A|482
6XZB|1|A2|A|483
6XZB|1|A2|C|484
*
6XZB|1|A2|G|496
6XZB|1|A2|A|497
6XZB|1|A2|G|498
6XZB|1|A2|U|499
6XZB|1|A2|G|500
6XZB|1|A2|A|501
6XZB|1|A2|A|502
6XZB|1|A2|A|503
6XZB|1|A2|A|504
6XZB|1|A2|A|505
6XZB|1|A2|G|506
6XZB|1|A2|A|507
6XZB|1|A2|A|508
6XZB|1|A2|C|509
6XZB|1|A2|C|510
Current chains
- Chain A2
- 23S rRNA
Nearby chains
- Chain Q2
- 50S ribosomal protein L20
- Chain S2
- 50S ribosomal protein L22
- Chain U2
- 50S ribosomal protein L24
Coloring options: