3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6XZB|1|A2|A|504, 6XZB|1|A2|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XZB_031 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1093
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6XZB|1|A2|G|30
6XZB|1|A2|C|31
*
6XZB|1|A2|G|474
6XZB|1|A2|C|475
6XZB|1|A2|G|476
6XZB|1|A2|A|477
6XZB|1|A2|A|478
6XZB|1|A2|A|479
6XZB|1|A2|A|480
6XZB|1|A2|G|481
6XZB|1|A2|A|482
6XZB|1|A2|A|483
6XZB|1|A2|C|484
*
6XZB|1|A2|G|496
6XZB|1|A2|A|497
6XZB|1|A2|G|498
6XZB|1|A2|U|499
6XZB|1|A2|G|500
6XZB|1|A2|A|501
6XZB|1|A2|A|502
6XZB|1|A2|A|503
6XZB|1|A2|A|504
6XZB|1|A2|A|505
6XZB|1|A2|G|506
6XZB|1|A2|A|507
6XZB|1|A2|A|508
6XZB|1|A2|C|509
6XZB|1|A2|C|510

Current chains

Chain A2
23S rRNA

Nearby chains

Chain Q2
50S ribosomal protein L20
Chain S2
50S ribosomal protein L22
Chain U2
50S ribosomal protein L24

Coloring options:


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