J3_6Y0G_008

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6Y0G|1|L5|U|2788, 6Y0G|1|L5|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y0G_008 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.0961

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6Y0G|1|L5|G|2402
6Y0G|1|L5|A|2403
6Y0G|1|L5|A|2404
6Y0G|1|L5|G|2405
*
6Y0G|1|L5|C|2785
6Y0G|1|L5|C|2786
6Y0G|1|L5|A|2787
6Y0G|1|L5|U|2788
6Y0G|1|L5|A|2789
6Y0G|1|L5|U|2790
6Y0G|1|L5|C|2791
*
6Y0G|1|L5|G|2800
6Y0G|1|L5|U|2801
6Y0G|1|L5|C|2802

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39