J3_6Y57_006

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6Y57|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y57_006 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.099

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6Y57|1|L5|C|2393
6Y57|1|L5|G|2394
6Y57|1|L5|A|2395
6Y57|1|L5|A|2396
6Y57|1|L5|G|2397
6Y57|1|L5|U|2398
6Y57|1|L5|G|2399
*
6Y57|1|L5|C|2805
6Y57|1|L5|A|2806
6Y57|1|L5|A|2807
*
6Y57|1|L5|U|2819
6Y57|1|L5|C|2820
6Y57|1|L5|U|2821
6Y57|1|L5|G|2822

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34