J3_6Y57_038

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUC*GUUG*CACUAAUA

Length

16 nucleotides

Bulged bases

6Y57|1|L5|A|4464, 6Y57|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y57_038 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.1705

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6Y57|1|L5|U|4463
6Y57|1|L5|A|4464
6Y57|1|L5|U|4465
6Y57|1|L5|C|4466
*
6Y57|1|L5|G|4491
6Y57|1|L5|U|4492
6Y57|1|L5|U|4493
6Y57|1|L5|G|4494
*
6Y57|1|L5|C|4506
6Y57|1|L5|A|4507
6Y57|1|L5|C|4508
6Y57|1|L5|U|4509
6Y57|1|L5|A|4510
6Y57|1|L5|A|4511
6Y57|1|L5|U|4512
6Y57|1|L5|A|4513

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23