3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
6Y6X|1|L5|A|1534, 6Y6X|1|L5|G|1641
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Y6X_004 not in the Motif Atlas
Homologous match to J3_8C3A_003
Geometric discrepancy: 0.0671
The information below is about J3_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

6Y6X|1|L5|U|1531
6Y6X|1|L5|G|1532
6Y6X|1|L5|A|1533
6Y6X|1|L5|A|1534
6Y6X|1|L5|C|1535
6Y6X|1|L5|U|1536
6Y6X|1|L5|A|1537
*
6Y6X|1|L5|U|1622
6Y6X|1|L5|A|1623
6Y6X|1|L5|G|1624
*
6Y6X|1|L5|C|1640
6Y6X|1|L5|G|1641
6Y6X|1|L5|A|1642
6Y6X|1|L5|A|1643

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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