J3_6Y6X_013

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6Y6X|1|L5|A|4464, 6Y6X|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y6X_013 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0754

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6Y6X|1|L5|U|4463
6Y6X|1|L5|A|4464
6Y6X|1|L5|U|4465
6Y6X|1|L5|C|4466
*
6Y6X|1|L5|G|4491
6Y6X|1|L5|U|4492
6Y6X|1|L5|U|4493
*
6Y6X|1|L5|A|4507
6Y6X|1|L5|C|4508
6Y6X|1|L5|U|4509
6Y6X|1|L5|A|4510
6Y6X|1|L5|A|4511
6Y6X|1|L5|U|4512
6Y6X|1|L5|A|4513

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23