J3_6Y7C_022

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

6Y7C|1|2|A|1183, 6Y7C|1|2|G|1199, 6Y7C|1|2|A|1203, 6Y7C|1|2|C|1457

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y7C_022 not in the Motif Atlas

Homologous match to J3_8CRE_080

Geometric discrepancy: 0.4246

The information below is about J3_8CRE_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6Y7C|1|2|C|1180
6Y7C|1|2|U|1181
6Y7C|1|2|U|1182
6Y7C|1|2|A|1183
6Y7C|1|2|A|1184
6Y7C|1|2|U|1185
6Y7C|1|2|U|1186
6Y7C|1|2|U|1187
*
6Y7C|1|2|G|1198
6Y7C|1|2|G|1199
6Y7C|1|2|G|1200
6Y7C|1|2|G|1201
6Y7C|1|2|A|1202
6Y7C|1|2|A|1203
6Y7C|1|2|A|1204
6Y7C|1|2|C|1205
6Y7C|1|2|U|1206
6Y7C|1|2|C|1207
6Y7C|1|2|A|1208
6Y7C|1|2|C|1209
*
6Y7C|1|2|G|1454
6Y7C|1|2|G|1455
6Y7C|1|2|C|1456
6Y7C|1|2|C|1457
6Y7C|1|2|G|1458

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A

Chain d

40S ribosomal protein S29-A

Chain i

Essential nuclear protein 1

Chain l

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1